Tools of the Trade Data Science Webinar Series

We welcome all scientists within the Nordic EMBL Partnership, and their local collaborators, to join our online seminars and clinics covering topics in data science, informatics, and computational approaches and methods applicable in molecular medicine research. 

Goals:

With these webinars, we expect that participants will be able to share knowledge and expertise, demonstrate how data science can be incorporated in onging reserach, and build interactions across the Nordic borders and beyond.

Format: 

  • Online seminars consist of a 45 min topic presentation and 15 min for Q&A

  • Online clinics consist of two parts: 1) 30 min instructional topic overview presentation including a state-of-the-art review, new developments in the pipeline and 5 min Q&A and 2) 30 min clinic-like Q&A for those that wish to see how the methods are applied on sample data. Follow-up 1:1 meetings with the presenter/experts are welcomed and encouraged. 

Please note that the sessions will not be recorded.

How to attend:

Get the Zoom link to join by completing our short registration form

Program

Date & Time Format & Topic Speaker, affiliation Host, affiliation
5 October 2022
15.00 CEST/16.00 EEST
Seminar: Introduction to modeling large, complex datasets with deep learning Leo Parts, Wellcome Trust Sanger Institute Johan Henriksson, MIMS
16 November 2022
15.00 CET/16.00 EET
Clinic: Image analysis, e.g., AI, machine learning Antti Suutala, FIMM
Lassi Paavolainen, FIMM
Gretchen Repasky, Nordic EMBL Partnership & FIMM
7 December 2022
15.00 CET/16.00 EET
Seminar: Advanced protein structure analysis, e.g. AI Alex Bateman, EMBL-EBI Anthony Mathlier, NCMM
18 January 2023
15.00 CET/16.00 EET
Clinic: Haplotype-resolved chromatin landscape in cancer with demo on how to integrate whole exome sequencing and ChIP-seq data Sebastian Waszak, NCMM Esa Pitkänen, FIMM
15 February 2023
15.00 CET/16.00 EET
Clinic: Data integration for single cell ATAC-seq and RNA-seq Johan Henriksson, MIMS Gretchen Repasky, Nordic EMBL Partnership & FIMM

Suggest webinar topics for 2023:

Is there a topic you want us to include in the 2023 program?
Do you have ideas for speakers?
You can suggest speakers, upvote and add new topics at any time.

Planning team:

Anthony Mathelier (NCMM)
Duda Kvitsiani (DANDRITE)
Esa Pitkånen (FIMM)
Gretchen Repasky (FIMM/Nordic EMBL Partnership)
Hanna Ollila (FIMM)
Johan Henriksson (MIMS)
Marieke Kuijjer (NCMM)

Questions? Contact:

Gretchen Repasky