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Lyngsø, R. B. & Pedersen, C. N. S. (2002). The Consensus String Problem and the Complexity of Comparing Hidden Markov Models. Journal of Computer and System Sciences, 65(3), 545-569.
Nedergaard, R., Risgaard-Petersen, N. & Finster, K. (2002). The importance of sulfate reduction associated with Ulva lactuca thalli during decomposition: a mesocosm experiment. Journal of Experimental Marine Biology and Ecology, 275, 15-29. http://www.elsevier.com/locate/jembe
Guldberg, L. B., Finster, K., Jørgensen, N. O. G., Middelboe, M. & Lomstein, B. A. (2002). Utilization of marine sedimentary dissolved organic nitrogen by native anaerobic bacteria. Limnology and Oceanography, 47(6), 1712-1722.
Bot, A. N. M., Ortius-Lechner, D., Finster, K. & Boomsma, J. J. (2002). Variable sensitivity of fungi and bacteria to compounds produced by the metapleural glands of leaf-cutting ants. Insectes soc., 49, 363-370.
Thomsen, T. R., Finster, K. & Ramsing, N. B. (2001). Biogeochemical and Molecular Signatures of Anaerobic Methane Oxidation in a Marine Sediment. Applied and Environmental Microbiology, 67(4), 1646-1656.
Jagota, A., Lyngsø, R. B., Pedersen, C. N. S., Gascuel, O. (Ed.) & Moret, B. M. E. (Ed.) (2001). Comparing Hidden Markov Model and a Stochastic Context-Free Grammer. In Proceedings of the First International Workshop on Algorithms in Bioinformatics (2149 of Lecture Notes in Computer Science ed., Vol. Volume 2149/2001, pp. 69-94). Springer.