VolePopulationManager.cpp This file contains the source for the vole population manager class
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#include <string.h>
#include <vector>
#include <iostream>
#include <fstream>
#include "../Landscape/ls.h"
#include "../BatchALMaSS/PopulationManager.h"
#include "../BatchALMaSS/AOR_Probe.h"
#include "../BatchALMaSS/BinaryMapBase.h"
#include "../BatchALMaSS/MovementMap.h"
#include "../Vole/vole_all.h"
#include "../Vole/VolePopulationManager.h"
#include "../Vole/GeneticMaterial.h"
#include "../Vole/Predators.h"
#include "../BatchALMaSS/BoostRandomGenerators.h"

Functions
static CfgInt	cfg_vole_reprofinishdate ("VOLE_REPROFINISHDATE", CFG_CUSTOM, 243)

static CfgBool	cfg_VoleSampleDataUsed ("VOLE_SAMPLE_FILE_USED", CFG_CUSTOM, false)

static CfgInt	cfg_VoleSampleFileDayOne ("VOLE_SAMPLE_FILE_DAY_ONE", CFG_CUSTOM, 109)

static CfgInt	cfg_VoleSampleFileDayTwo ("VOLE_SAMPLE_FILE_DAY_TWO", CFG_CUSTOM, 287)

static CfgFloat	cfg_VoleFemaleMove ("VOLE_FEMALEMOVE", CFG_CUSTOM, 0.0505)

static CfgInt	cfg_MateRadius ("FEMALE_MATE_RADIUS", CFG_CUSTOM, 250)

static CfgFloat	cfg_VoleBackgroundMort ("VOLE_BCKMORT", CFG_CUSTOM, 0.0025)

static CfgFloat	cfg_MoveToLessFavourable ("VOLEMOVETOLESSFAVOURALBLE", CFG_CUSTOM, 0.005)

static CfgInt	cfg_sigAgeDiff ("VOLE_SIGAGEDIFF", CFG_CUSTOM, 30)

static CfgInt	cfg_geneticproductfertilityeffect ("VOLE_GENETICPRODUCTFERTILITYEFFECT", CFG_CUSTOM, 50)

static CfgFloat	cfg_geneticsterilitychance ("VOLE_GENETICSTERILITYCHANCE", CFG_CUSTOM, 0)

static CfgFloat	cfg_f1sterilitychance ("VOLE_FONESTERILITYCHANCE", CFG_CUSTOM, 0.0)

static CfgBool	cfg_genetic_output ("VOLE_GENETIC_OUTPUT", CFG_CUSTOM, true)

static CfgInt	cfg_genetetic_output_sample_size ("VOLE_GENETIC_SAMPLE_SIZE", CFG_CUSTOM, 500)

static CfgInt	cfg_GeneticsResultOutputFirstYear ("GENETICS_RESULT_OUTPUT_FIRST_YEAR", CFG_CUSTOM, 100000)

static CfgInt	cfg_GeneticResultOutputSecondYear ("GENETICS_RESULT_OUTPUT_SECOND_YEAR", CFG_CUSTOM, 100000)

CfgBool	cfg_GeneticsResultOutputUsed ("GENETICS_RESULT_OUTPUT_USED", CFG_CUSTOM, false)

static CfgInt	cfg_GeneticsResultOutputInterval_1 ("GENETICS_RESULT_OUTPUT_INTERVAL_ONE", CFG_CUSTOM, 100000)

static CfgInt	cfg_GeneticsResultOutputDay_1 ("GENETICS_RESULT_OUTPUT_DAY_ONE", CFG_CUSTOM, 3)

static CfgInt	cfg_GeneticsResultOutputDay_2 ("GENETICS_RESULT_OUTPUT_DAY_TWO", CFG_CUSTOM, 6)

static CfgBool	cfg_VoleUseResistanceOuput ("VOLE_RESISTANCEOUTPUT_ON_OFF", CFG_CUSTOM, false)

static CfgInt	cfg_VoleResistanceDay ("VOLE_RESISTANCEOUTPUT_DAY", CFG_CUSTOM, 365)

static CfgFloat	cfg_ResistanceStartFrequency ("VOLE_RESISTANCESTARTFREQ", CFG_CUSTOM, 0.01)

static CfgBool	cfg_UseVoleTraplines ("VOLE_TRAPLINES_ON_OFF", CFG_CUSTOM, false)

static CfgStr	cfg_VoleTraplinesfile ("VOLE_TRAPLINESFILE", CFG_CUSTOM, "VoleTraplines.txt")

static CfgInt	cfg_VoleTrapResolution ("VOLE_TRAPRESOLUTION", CFG_CUSTOM, 2)

CfgBool	cfg_RecordVoleMort ("VOLE_RECORDMORT_ON", CFG_CUSTOM, false)

static CfgStr	cfg_VoleRecordMortFile ("VOLE_RECORDMORTFILE", CFG_CUSTOM, "VoleMortalityCauses.txt")

CfgBool	cfg_SexRatiosOutput_used ("VOLE_SEXRATIOSOUTPUT_USED", CFG_CUSTOM, false)

static CfgStr	cfg_SexRatiosOutput_filename ("VOLE_SEXRATIOS_FILENAME", CFG_CUSTOM,"VoleSexRatios.txt")

static CfgInt	cfg_SexRatiosOutput_interval ("VOLE_SEXRATIOSOUTPUT_INTERVAL", CFG_CUSTOM, 1)

static CfgInt	cfg_SexRatiosOutput_day ("VOLE_SEXRATIOSOUTPUT_DAY", CFG_CUSTOM, -1)

static CfgInt	cfg_SexRatiosOutputFirstYear ("VOLE_SEXRATIOSOUTPUT_FIRSTYEAR", CFG_CUSTOM, 1)

static CfgBool	cfg_voleLandscapeGridOutputUsed ("VOLE_LANDSCAPEGRIDOUTPUTUSED", CFG_CUSTOM, true)

static CfgInt	cfg_voleLandscapeGridOutputDay ("VOLE_LANDSCAPEGRIDOUTPUTDAY", CFG_CUSTOM, 10000)

static CfgBool	cfg_volestartinoptimalonly ("VOLE_STARTINOPTIMALONLY", CFG_CUSTOM, false)

static CfgInt	cfg_vole_starting_numberM ("VOLE_START_NO_M", CFG_CUSTOM, 5000)

static CfgInt	cfg_vole_starting_numberF ("VOLE_START_NO_F", CFG_CUSTOM, 5000)

static CfgFloat	cfg_GrassStartGrowth ("VOLE_GRASSSTARTGROWTH", CFG_CUSTOM, 3.552)

static CfgFloat	cfg_GrassStartGrowthDay ("VOLE_GRASSSTARTGROWTHDAY", CFG_CUSTOM, 80)

static CfgBool	cfg_useagesexlocation ("VOLE_USEAGESEXLOCATION", CFG_CUSTOM, false)

static CfgFloat	cfg_MutationChance ("GENETICS_MUTATION_CHANCE", CFG_CUSTOM, 0.001)

static CfgInt	cfg_MaxAllele ("GENETICS_MAXALLELE", CFG_CUSTOM, 255)

Variables
boost::variate_generator< base_generator_type &, boost::uniform_real<> >	g_rand_uni

double	MutationChance

CfgInt	cfg_pm_eventfrequency

CfgInt	cfg_pm_eventsize

CfgBool	cfg_ReallyBigOutputMonthly_used

CfgBool	cfg_RipleysOutput_used

CfgBool	cfg_ReallyBigOutput_used

CfgFloat	cfg_extradispmort

double	g_extradispmort

double	g_DailyMortChance

double	g_DailyMortChanceMaleTerr

double	g_NoFemalesMove

CfgInt	cfg_VoleDDepConst

int	g_sigAgeDiff

int	MinReproAgeM

int	MinReproAgeF

CfgInt	cfg_MinReproAgeM

CfgInt	cfg_MinReproAgeF

unsigned char	g_MaxAllele

double	MoveToLessFavourable

const float	ReproTable_base [2][12]

int	g_MaleReproductFinish

CfgInt	cfg_MinFemaleTerritorySize

CfgInt	cfg_MinMaleTerritorySize

CfgBool	cfg_ResistanceDominant

Detailed Description

VolePopulationManager.cpp This file contains the source for the vole population manager class

by Chris J. Topping
Version of 28th Jan 2001

With additions as noted in:
April 2006
November 2007
Doxygen formatted comments in May 2008

Definition in file VolePopulationManager.cpp.

Function Documentation

◆ cfg_f1sterilitychance()

static CfgFloat cfg_f1sterilitychance	(	"VOLE_FONESTERILITYCHANCE"	,
		CFG_CUSTOM	,
		0.	0
	)

static

Toxicological variable for specific pesticide effects

Referenced by Vole_Population_Manager::Init().

◆ cfg_genetetic_output_sample_size()

static CfgInt cfg_genetetic_output_sample_size	(	"VOLE_GENETIC_SAMPLE_SIZE"	,
		CFG_CUSTOM	,
		500
	)

static

The number of each sex to sample for genetics

Referenced by Vole_Population_Manager::DoFirst().

◆ cfg_genetic_output()

static CfgBool cfg_genetic_output	(	"VOLE_GENETIC_OUTPUT"	,
		CFG_CUSTOM	,
		true
	)

static

Record genetic data or not

◆ cfg_geneticproductfertilityeffect()

static CfgInt cfg_geneticproductfertilityeffect	(	"VOLE_GENETICPRODUCTFERTILITYEFFECT"	,
		CFG_CUSTOM	,
		50
	)

static

Toxicological variable for specific pesticide effects

Referenced by Vole_Population_Manager::Init().

◆ cfg_GeneticResultOutputSecondYear()

static CfgInt cfg_GeneticResultOutputSecondYear	(	"GENETICS_RESULT_OUTPUT_SECOND_YEAR"	,
		CFG_CUSTOM	,
		100000
	)

static

◆ cfg_GeneticsResultOutputDay_1()

static CfgInt cfg_GeneticsResultOutputDay_1	(	"GENETICS_RESULT_OUTPUT_DAY_ONE"	,
		CFG_CUSTOM	,
		3
	)

static

◆ cfg_GeneticsResultOutputDay_2()

static CfgInt cfg_GeneticsResultOutputDay_2	(	"GENETICS_RESULT_OUTPUT_DAY_TWO"	,
		CFG_CUSTOM	,
		6
	)

static

◆ cfg_GeneticsResultOutputFirstYear()

static CfgInt cfg_GeneticsResultOutputFirstYear	(	"GENETICS_RESULT_OUTPUT_FIRST_YEAR"	,
		CFG_CUSTOM	,
		100000
	)

static

Referenced by Vole_Population_Manager::DoFirst().

◆ cfg_GeneticsResultOutputInterval_1()

static CfgInt cfg_GeneticsResultOutputInterval_1	(	"GENETICS_RESULT_OUTPUT_INTERVAL_ONE"	,
		CFG_CUSTOM	,
		100000
	)

static

Referenced by Vole_Population_Manager::DoFirst().

◆ cfg_GeneticsResultOutputUsed()

CfgBool cfg_GeneticsResultOutputUsed	(	"GENETICS_RESULT_OUTPUT_USED"	,
		CFG_CUSTOM	,
		false
	)

◆ cfg_geneticsterilitychance()

static CfgFloat cfg_geneticsterilitychance	(	"VOLE_GENETICSTERILITYCHANCE"	,
		CFG_CUSTOM	,
		0
	)

static

Toxicological variable for specific pesticide effects

Referenced by Vole_Population_Manager::Init().

◆ cfg_GrassStartGrowth()

static CfgFloat cfg_GrassStartGrowth	(	"VOLE_GRASSSTARTGROWTH"	,
		CFG_CUSTOM	,
		3.	552
	)

static

The mean temperature over 14 days at which the grass is assummed to start to grow

Referenced by Vole_Population_Manager::DoFirst().

◆ cfg_GrassStartGrowthDay()

static CfgFloat cfg_GrassStartGrowthDay	(	"VOLE_GRASSSTARTGROWTHDAY"	,
		CFG_CUSTOM	,
		80
	)

static

The date before which repro is impossible

Referenced by Vole_Population_Manager::DoFirst().

◆ cfg_MateRadius()

static CfgInt cfg_MateRadius	(	"FEMALE_MATE_RADIUS"	,
		CFG_CUSTOM	,
		250
	)

static

Referenced by Vole_Population_Manager::FindOutsideRadiusMale(), and Vole_Population_Manager::FindWithinRadiusMale().

◆ cfg_MaxAllele()

static CfgInt cfg_MaxAllele	(	"GENETICS_MAXALLELE"	,
		CFG_CUSTOM	,
		255
	)

static

The maximum allele value used

Referenced by Vole_Population_Manager::Init().

◆ cfg_MoveToLessFavourable()

static CfgFloat cfg_MoveToLessFavourable	(	"VOLEMOVETOLESSFAVOURALBLE"	,
		CFG_CUSTOM	,
		0.	005
	)

static

The probability of moving to less favourable habitats when walking

Referenced by Vole_Population_Manager::Init().

◆ cfg_MutationChance()

static CfgFloat cfg_MutationChance	(	"GENETICS_MUTATION_CHANCE"	,
		CFG_CUSTOM	,
		0.	001
	)

static

Mutation probability

Referenced by Vole_Population_Manager::Init().

◆ cfg_RecordVoleMort()

CfgBool cfg_RecordVoleMort	(	"VOLE_RECORDMORT_ON"	,
		CFG_CUSTOM	,
		false
	)

Referenced by Vole_Population_Manager::DoFirst(), Vole_Population_Manager::Init(), and Vole_Population_Manager::~Vole_Population_Manager().

◆ cfg_ResistanceStartFrequency()

static CfgFloat cfg_ResistanceStartFrequency	(	"VOLE_RESISTANCESTARTFREQ"	,
		CFG_CUSTOM	,
		0.	01
	)

static

The starting frequency of '1' in chromosome 0 locus no 3

Referenced by Vole_Population_Manager::Init().

◆ cfg_SexRatiosOutput_day()

static CfgInt cfg_SexRatiosOutput_day	(	"VOLE_SEXRATIOSOUTPUT_DAY"	,
		CFG_CUSTOM	,
		-	1
	)

static

Referenced by Vole_Population_Manager::DoFirst().

◆ cfg_SexRatiosOutput_filename()

static CfgStr cfg_SexRatiosOutput_filename	(	"VOLE_SEXRATIOS_FILENAME"	,
		CFG_CUSTOM	,
		"VoleSexRatios.txt"
	)

static

Referenced by Vole_Population_Manager::OpenSexRatiosProbe().

◆ cfg_SexRatiosOutput_interval()

static CfgInt cfg_SexRatiosOutput_interval	(	"VOLE_SEXRATIOSOUTPUT_INTERVAL"	,
		CFG_CUSTOM	,
		1
	)

static

Referenced by Vole_Population_Manager::DoFirst().

◆ cfg_SexRatiosOutput_used()

CfgBool cfg_SexRatiosOutput_used	(	"VOLE_SEXRATIOSOUTPUT_USED"	,
		CFG_CUSTOM	,
		false
	)

Referenced by Vole_Population_Manager::DoFirst(), Vole_Population_Manager::Init(), and Vole_Population_Manager::~Vole_Population_Manager().

◆ cfg_SexRatiosOutputFirstYear()

static CfgInt cfg_SexRatiosOutputFirstYear	(	"VOLE_SEXRATIOSOUTPUT_FIRSTYEAR"	,
		CFG_CUSTOM	,
		1
	)

static

Referenced by Vole_Population_Manager::DoFirst().

◆ cfg_sigAgeDiff()

static CfgInt cfg_sigAgeDiff	(	"VOLE_SIGAGEDIFF"	,
		CFG_CUSTOM	,
		30
	)

static

The age difference before an old male can oust a younger one

Referenced by Vole_Population_Manager::Init().

◆ cfg_useagesexlocation()

static CfgBool cfg_useagesexlocation	(	"VOLE_USEAGESEXLOCATION"	,
		CFG_CUSTOM	,
		false
	)

static

Special output file toggle

Referenced by Vole_Population_Manager::DoFirst(), Vole_Population_Manager::Init(), and Vole_Population_Manager::~Vole_Population_Manager().

◆ cfg_UseVoleTraplines()

static CfgBool cfg_UseVoleTraplines	(	"VOLE_TRAPLINES_ON_OFF"	,
		CFG_CUSTOM	,
		false
	)

static

Referenced by Vole_Population_Manager::DoFirst(), Vole_Population_Manager::Init(), and Vole_Population_Manager::~Vole_Population_Manager().

◆ cfg_vole_reprofinishdate()

static CfgInt cfg_vole_reprofinishdate	(	"VOLE_REPROFINISHDATE"	,
		CFG_CUSTOM	,
		243
	)

static

Referenced by Vole_Population_Manager::Init().

◆ cfg_vole_starting_numberF()

static CfgInt cfg_vole_starting_numberF	(	"VOLE_START_NO_F"	,
		CFG_CUSTOM	,
		5000
	)

static

How many female voles to start with

Referenced by Vole_Population_Manager::Init().

◆ cfg_vole_starting_numberM()

static CfgInt cfg_vole_starting_numberM	(	"VOLE_START_NO_M"	,
		CFG_CUSTOM	,
		5000
	)

static

How many male voles to start with

Referenced by Vole_Population_Manager::Init().

◆ cfg_VoleBackgroundMort()

static CfgFloat cfg_VoleBackgroundMort	(	"VOLE_BCKMORT"	,
		CFG_CUSTOM	,
		0.	0025
	)

static

The unspecified background mortality rate

Referenced by Vole_Population_Manager::DoFirst(), and Vole_Population_Manager::Init().

◆ cfg_VoleFemaleMove()

static CfgFloat cfg_VoleFemaleMove	(	"VOLE_FEMALEMOVE"	,
		CFG_CUSTOM	,
		0.	0505
	)

static

Referenced by Vole_Population_Manager::Init().

◆ cfg_voleLandscapeGridOutputDay()

static CfgInt cfg_voleLandscapeGridOutputDay	(	"VOLE_LANDSCAPEGRIDOUTPUTDAY"	,
		CFG_CUSTOM	,
		10000
	)

static

Referenced by Vole_Population_Manager::DoFirst().

◆ cfg_voleLandscapeGridOutputUsed()

static CfgBool cfg_voleLandscapeGridOutputUsed	(	"VOLE_LANDSCAPEGRIDOUTPUTUSED"	,
		CFG_CUSTOM	,
		true
	)

static

Referenced by Vole_Population_Manager::Init().

◆ cfg_VoleRecordMortFile()

static CfgStr cfg_VoleRecordMortFile	(	"VOLE_RECORDMORTFILE"	,
		CFG_CUSTOM	,
		"VoleMortalityCauses.txt"
	)

static

Referenced by Vole_Population_Manager::Init().

◆ cfg_VoleResistanceDay()

static CfgInt cfg_VoleResistanceDay	(	"VOLE_RESISTANCEOUTPUT_DAY"	,
		CFG_CUSTOM	,
		365
	)

static

The day in the year to output the resitance gene frequency

Referenced by Vole_Population_Manager::DoFirst().

◆ cfg_VoleSampleDataUsed()

static CfgBool cfg_VoleSampleDataUsed	(	"VOLE_SAMPLE_FILE_USED"	,
		CFG_CUSTOM	,
		false
	)

static

◆ cfg_VoleSampleFileDayOne()

static CfgInt cfg_VoleSampleFileDayOne	(	"VOLE_SAMPLE_FILE_DAY_ONE"	,
		CFG_CUSTOM	,
		109
	)

static

◆ cfg_VoleSampleFileDayTwo()

static CfgInt cfg_VoleSampleFileDayTwo	(	"VOLE_SAMPLE_FILE_DAY_TWO"	,
		CFG_CUSTOM	,
		287
	)

static

◆ cfg_volestartinoptimalonly()

static CfgBool cfg_volestartinoptimalonly	(	"VOLE_STARTINOPTIMALONLY"	,
		CFG_CUSTOM	,
		false
	)

static

Referenced by Vole_Population_Manager::SuitableStartingLocation().

◆ cfg_VoleTraplinesfile()

static CfgStr cfg_VoleTraplinesfile	(	"VOLE_TRAPLINESFILE"	,
		CFG_CUSTOM	,
		"VoleTraplines.txt"
	)

static

Referenced by Vole_Population_Manager::Init().

◆ cfg_VoleTrapResolution()

static CfgInt cfg_VoleTrapResolution	(	"VOLE_TRAPRESOLUTION"	,
		CFG_CUSTOM	,
		2
	)

static

Referenced by Vole_Population_Manager::Init().

◆ cfg_VoleUseResistanceOuput()

static CfgBool cfg_VoleUseResistanceOuput	(	"VOLE_RESISTANCEOUTPUT_ON_OFF"	,
		CFG_CUSTOM	,
		false
	)

static

Flag turning resistance output on or off

Referenced by Vole_Population_Manager::DoFirst(), Vole_Population_Manager::Init(), and Vole_Population_Manager::~Vole_Population_Manager().

Variable Documentation

◆ cfg_extradispmort

CfgFloat cfg_extradispmort

Extra mortality for dispersing individuals

Referenced by Vole_Population_Manager::DoFirst(), and Vole_Population_Manager::Init().

◆ cfg_MinFemaleTerritorySize

CfgInt cfg_MinFemaleTerritorySize

◆ cfg_MinMaleTerritorySize

CfgInt cfg_MinMaleTerritorySize

◆ cfg_MinReproAgeF

CfgInt cfg_MinReproAgeF

Referenced by Vole_Population_Manager::Init().

◆ cfg_MinReproAgeM

CfgInt cfg_MinReproAgeM

Referenced by Vole_Population_Manager::Init().

◆ cfg_pm_eventfrequency

CfgInt cfg_pm_eventfrequency

The frequency of catastrophes

Referenced by Vole_Population_Manager::Catastrophe().

◆ cfg_pm_eventsize

CfgInt cfg_pm_eventsize

The size of catastrophes

Referenced by Vole_Population_Manager::Catastrophe().

◆ cfg_ReallyBigOutput_used

CfgBool cfg_ReallyBigOutput_used

Raw data for spatial output for calculating Ripley's spatial statistics with additional information about habitat and physiology

Referenced by Vole_Population_Manager::Init().

◆ cfg_ReallyBigOutputMonthly_used

CfgBool cfg_ReallyBigOutputMonthly_used

Raw data for spatial output for calculating Ripley's spatial statistics

◆ cfg_ResistanceDominant

CfgBool cfg_ResistanceDominant

Referenced by Vole_Population_Manager::ResistanceOutput().

◆ cfg_RipleysOutput_used

CfgBool cfg_RipleysOutput_used

Referenced by Vole_Population_Manager::Init().

◆ cfg_VoleDDepConst

CfgInt cfg_VoleDDepConst

◆ g_DailyMortChance

double g_DailyMortChance

risk of daily mortality

Mortality per day as a background mortality encompassing all things not directly modelled. This may include specialist predators if they are not simulated - if they are then reduce this value

Definition at line 189 of file Vole_all.cpp.

Referenced by Vole_Population_Manager::DoFirst(), Vole_Population_Manager::Init(), Vole_Base::MortalityTest(), and Vole_Male::MortalityTest().

◆ g_DailyMortChanceMaleTerr

double g_DailyMortChanceMaleTerr

Definition at line 190 of file Vole_all.cpp.

Referenced by Vole_Population_Manager::DoFirst(), and Vole_Male::MortalityTest().

◆ g_extradispmort

double g_extradispmort

Definition at line 204 of file Vole_all.cpp.

Referenced by Vole_JuvenileMale::Dispersal(), Vole_Male::Dispersal(), Vole_JuvenileFemale::Dispersal(), Vole_Population_Manager::DoFirst(), and Vole_Population_Manager::Init().

◆ g_MaleReproductFinish

int g_MaleReproductFinish

1/10 deduced from Erlinge et al, 1983

Definition at line 183 of file Vole_all.cpp.

Referenced by Vole_Population_Manager::DoFirst(), and Vole_Population_Manager::Init().

◆ g_MaxAllele

unsigned char g_MaxAllele

Definition at line 53 of file GeneticMaterial.cpp.

Referenced by Vole_Population_Manager::Init(), and GeneticMaterial256_16::Mutation_3().

◆ g_NoFemalesMove

double g_NoFemalesMove

Definition at line 205 of file Vole_all.cpp.

Referenced by Vole_Population_Manager::Init(), Vole_JuvenileMale::st_Eval_n_Explore(), and Vole_Male::st_Eval_n_Explore().

◆ g_rand_uni

boost::variate_generator<base_generator_type&, boost::uniform_real<> > g_rand_uni

Referenced by Vole_Population_Manager::CreateObjects(), Vole_Population_Manager::Init(), and Vole_Population_Manager::SupplyInOlderTerr().

◆ g_sigAgeDiff

int g_sigAgeDiff

Age difference required before eviction by older male

Definition at line 153 of file Vole_all.cpp.

Referenced by Vole_Population_Manager::Init(), and Vole_Population_Manager::SupplyInOlderTerr().

◆ MinReproAgeF

int MinReproAgeF

The youngest a female can be reproductive at.

Definition at line 147 of file Vole_all.cpp.

Referenced by Vole_Population_Manager::Init(), Vole_Female::ReInit(), Vole_Female::st_BecomeReproductive(), Vole_JuvenileFemale::Step(), and Vole_Female::Vole_Female().

◆ MinReproAgeM

int MinReproAgeM

The youngest a male can be reproductive at.

Definition at line 145 of file Vole_all.cpp.

Referenced by Vole_JuvenileMale::EndStep(), and Vole_Population_Manager::Init().

◆ MoveToLessFavourable

double MoveToLessFavourable

This is specified as a global because it avoids costing time on look-ups.
This is needed because of the extreme CPU intensive movement functions

Definition at line 157 of file VolePopulationManager.cpp.

Referenced by Vole_Base::DoWalking(), Vole_Base::DoWalkingCorrect(), and Vole_Population_Manager::Init().

◆ MutationChance

double MutationChance

Definition at line 52 of file GeneticMaterial.cpp.

Referenced by Vole_Population_Manager::Init(), GeneticMaterial::Mutation_1(), GeneticMaterial1616::Mutation_1(), GeneticMaterial::Mutation_1ab(), GeneticMaterial::Mutation_2(), GeneticMaterial1616::Mutation_2(), GeneticMaterial::Mutation_3(), GeneticMaterial1616::Mutation_3(), GeneticMaterial256_16::Mutation_3(), and GeneticMaterial::Mutation_4().

◆ ReproTable_base

const float ReproTable_base[2][12]

Initial value:

= { {0,0,0,0,4,4,4,4,3,2,3,0},
                                 {0,0,4,4,5,5,5,5,4,4,0,0} 
                               }

Litter sizes dependent upon month and year

Definition at line 171 of file VolePopulationManager.cpp.

Referenced by Vole_Population_Manager::Init().

Functions

Variables

Detailed Description

Function Documentation

◆ cfg_f1sterilitychance()

◆ cfg_genetetic_output_sample_size()

◆ cfg_genetic_output()

◆ cfg_geneticproductfertilityeffect()

◆ cfg_GeneticResultOutputSecondYear()

◆ cfg_GeneticsResultOutputDay_1()

◆ cfg_GeneticsResultOutputDay_2()

◆ cfg_GeneticsResultOutputFirstYear()

◆ cfg_GeneticsResultOutputInterval_1()

◆ cfg_GeneticsResultOutputUsed()

◆ cfg_geneticsterilitychance()

◆ cfg_GrassStartGrowth()

◆ cfg_GrassStartGrowthDay()

◆ cfg_MateRadius()

◆ cfg_MaxAllele()

◆ cfg_MoveToLessFavourable()

◆ cfg_MutationChance()

◆ cfg_RecordVoleMort()

◆ cfg_ResistanceStartFrequency()

◆ cfg_SexRatiosOutput_day()

◆ cfg_SexRatiosOutput_filename()

◆ cfg_SexRatiosOutput_interval()

◆ cfg_SexRatiosOutput_used()

◆ cfg_SexRatiosOutputFirstYear()

◆ cfg_sigAgeDiff()

◆ cfg_useagesexlocation()

◆ cfg_UseVoleTraplines()

◆ cfg_vole_reprofinishdate()

◆ cfg_vole_starting_numberF()

◆ cfg_vole_starting_numberM()

◆ cfg_VoleBackgroundMort()

◆ cfg_VoleFemaleMove()

◆ cfg_voleLandscapeGridOutputDay()

◆ cfg_voleLandscapeGridOutputUsed()

◆ cfg_VoleRecordMortFile()

◆ cfg_VoleResistanceDay()

◆ cfg_VoleSampleDataUsed()

◆ cfg_VoleSampleFileDayOne()

◆ cfg_VoleSampleFileDayTwo()

◆ cfg_volestartinoptimalonly()

◆ cfg_VoleTraplinesfile()

◆ cfg_VoleTrapResolution()

◆ cfg_VoleUseResistanceOuput()

Variable Documentation

◆ cfg_extradispmort

◆ cfg_MinFemaleTerritorySize

◆ cfg_MinMaleTerritorySize

◆ cfg_MinReproAgeF

◆ cfg_MinReproAgeM

◆ cfg_pm_eventfrequency

◆ cfg_pm_eventsize

◆ cfg_ReallyBigOutput_used

◆ cfg_ReallyBigOutputMonthly_used

◆ cfg_ResistanceDominant

◆ cfg_RipleysOutput_used

◆ cfg_VoleDDepConst

◆ g_DailyMortChance

◆ g_DailyMortChanceMaleTerr

◆ g_extradispmort

◆ g_MaleReproductFinish

◆ g_MaxAllele

◆ g_NoFemalesMove

◆ g_rand_uni

◆ g_sigAgeDiff

◆ MinReproAgeF

◆ MinReproAgeM

◆ MoveToLessFavourable

◆ MutationChance

◆ ReproTable_base