Partridge_all.cpp This file contains the code for all partridge lifestage classes
More...

#include <iostream>
#include <fstream>
#include "../Landscape/ls.h"
#include "../BatchALMaSS/PopulationManager.h"
#include "../Partridge/Partridge_Communication.h"
#include "../Partridge/Partridge_All.h"
#include "../Partridge/Partridge_Population_Manager.h"
#include "../Partridge/Partridge_Covey.h"
#include "../BatchALMaSS/BoostRandomGenerators.h"

Variables
double	g_FoodNeed [200]

int	g_MaxWalk [200]

boost::variate_generator< base_generator_type &, boost::uniform_real<> >	g_rand_uni

double	g_par_rainfactor

static CfgInt	cfg_par_triggerlayingvar ("PAR_TRIGGERLAYINGVAR", CFG_CUSTOM, 48)
	Generates variation around the laying trigger. More...

static CfgFloat	cfg_par_extraction_rate ("PAR_EXTRACTION_RATE", CFG_CUSTOM, 0.0085)
	Food extraction rate. More...

CfgInt	cfg_par_max_lifespan ("PAR_MAX_LIFESPAN", CFG_CUSTOM, 3650)
	Maximum physiological lifespan. More...

CfgInt	cfg_par_min_lifespan ("PAR_MIN_LIFESPAN", CFG_CUSTOM, 1825)
	Minimum physiological lifespan. More...

CfgInt	cfg_par_start_dissolve ("PAR_START_DISSOLVE", CFG_CUSTOM, 30)
	The earliest covey dissolve date. More...

static CfgInt	cfg_par_triggerlaying ("PAR_TRIGGERLAYING", CFG_CUSTOM, 850)
	The number of minutes daylight as a minimum before triggering egg-laying behaviour. More...

static CfgInt	cfg_buildupwait ("PAR_BUILDUP_WAIT", CFG_CUSTOM, 130)
	Time period after finding territory before making nest. More...

static CfgInt	cfg_par_days_to_make_nest ("PAR_DAYS_TO_MAKE_NEST", CFG_CUSTOM, 5)
	Days used for nestbuilding. More...

static CfgInt	cfg_par_incubation_period ("PAR_INCUBATION_PERIOD", CFG_CUSTOM, 24)
	Lenght of incubation period. More...

CfgInt	cfg_par_mature_threshold ("PAR_MATURE_THRESHOLD", CFG_CUSTOM, 84)
	Age at maturing in days. More...

CfgInt	cfg_par_last_brood_date ("PAR_LAST_BROOD_DATE", CFG_CUSTOM, 180)
	Latest date for a reproduction attempt. More...

CfgInt	cfg_par_male_gives_up ("PAR_MALE_GIVES_UP", CFG_CUSTOM, 170)
	Latest date a male will mate search. More...

CfgInt	cfg_par_max_terr_qual ("PAR_MAX_TERR_QUAL", CFG_CUSTOM, 13000)
	The minimum territory quality needed in early season. More...

CfgInt	cfg_par_min_terr_qual ("PAR_MIN_TERR_QUAL", CFG_CUSTOM, 6900)
	The minimum territory quality needed in late season. More...

static CfgInt	cfg_par_MaleFlyingDistance ("PAR_MALEFLYINGDISTANCE", CFG_CUSTOM, 2000)
	The maximum flying distance for males. More...

static CfgInt	cfg_par_MaleMateSearchArea ("PAR_MALEMATESEARCHAREA", CFG_CUSTOM, 500)
	Male mate searching radius. More...

static CfgInt	cfg_par_female_movement_max ("PAR_FEMALE_MOVEMENT_MAX", CFG_CUSTOM, 100)
	Female max daily movement. More...

static CfgInt	cfg_par_min_no_eggs ("PAR_MIN_NO_EGGS", CFG_CUSTOM, 7)
	Minimum clutch size. More...

static CfgFloat	cfg_par_days_per_egg ("PAR_DAY_PER_EGG", CFG_CUSTOM, 1.5)
	Days taken to lay 1 egg. More...

static CfgFloat	cfg_par_female_incubation_mortality_slope ("PAR_FEMALE_INCUBATION_MORTALITY_SLOPE", CFG_CUSTOM, -0.00122)
	Increasing hen predation with density (slope) More...

static CfgFloat	cfg_par_female_incubation_mortality_const ("PAR_FEMALE_INCUBATION_MORTALITY_CONST", CFG_CUSTOM, 1.00192)
	Increasing hen predation with density (intercept) More...

static CfgInt	cfg_par_base_mortality ("PAR_BASE_MORTALITY", CFG_CUSTOM, 0)
	Unused. More...

static CfgFloat	cfg_par_clutch_mortality ("PAR_CLUTCH_MORTALITY", CFG_CUSTOM, 0.00135)
	Clutch - daily probability of non-explicitly modelled mortality. More...

static CfgFloat	cfg_par_chick_mortality ("PAR_CHICK_MORTALITY", CFG_CUSTOM, 0.02043)
	Chick - daily probability of non-explicitly modelled mortality. More...

static CfgFloat	cfg_par_chick2_mortality ("PAR_CHICK_TWO_MORTALITY", CFG_CUSTOM, 1.0)
	Chick2 - scaler applied to adult mortalities. More...

static CfgFloat	cfg_par_adult_mortalitySummer ("PAR_ADULT_MORTALITYSUMMER", CFG_CUSTOM, 0.0001)
	Adults - daily probability of non-explicitly modelled mortality in Summer. More...

static CfgFloat	cfg_par_adult_mortalitySpring ("PAR_ADULT_MORTALITYSPRING", CFG_CUSTOM, 0.0096)
	Adults - daily probability of non-explicitly modelled mortality in Spring. More...

static CfgFloat	cfg_par_adult_mortalityWinter ("PAR_ADULT_MORTALITYWINTER", CFG_CUSTOM, 0.0217)
	Adults - daily probability of non-explicitly modelled mortality in Winter. More...

static CfgFloat	cfg_par_adult_mortality_alone ("PAR_ADULT_MORTALITY_ALONE", CFG_CUSTOM, 1.4)
	Adults - extra mortality scaler if alone. More...

static CfgInt	cfg_par_starve_threshold ("PAR_STARVE_THRESHOLD", CFG_CUSTOM, 4)
	Chick - no. days or negative energy before death. More...

static CfgFloat	cfg_par_infertile_eggs ("PAR_INFERTILE_EGGS", CFG_CUSTOM, 0.08)
	Proportion of infertile eggs. More...

static CfgFloat	cfg_par_ad_cut ("PAR_AD_CUT_MORT", CFG_CUSTOM, 0.01)
	Adult % mortality on cutting. More...

static CfgFloat	cfg_par_ch_cut ("PAR_CH_CUT_MORT", CFG_CUSTOM, 0.05)
	Chick % mortality on cutting. More...

static CfgFloat	cfg_par_cl_cut ("PAR_CL_CUT_MORT", CFG_CUSTOM, 0.29)
	Clutch % mortality on cutting. More...

static CfgFloat	cfg_female_mowing_chance ("PAR_FEMALEMOWNMORTALITY", CFG_CUSTOM, 1)
	Chance of female death if incubating a mown clutch. More...

Partridge_Population_Manager *	g_manager
	Clutch mortality on soil cultivation. More...

static long	g_partridge_id = 0

Detailed Description

Partridge_all.cpp This file contains the code for all partridge lifestage classes

by Chris J. Topping
Original version 15th October 2008

Doxygen formatted comments in October 2008

Definition in file Partridge_All.cpp.

Variable Documentation

◆ cfg_buildupwait

CfgInt cfg_buildupwait("PAR_BUILDUP_WAIT", CFG_CUSTOM, 130)

static

Time period after finding territory before making nest.

Referenced by Partridge_Female::FFindingTerritory(), and Partridge_Female::OnMating().

◆ cfg_female_mowing_chance

CfgFloat cfg_female_mowing_chance("PAR_FEMALEMOWNMORTALITY", CFG_CUSTOM, 1)

static

Chance of female death if incubating a mown clutch.

Referenced by Partridge_Female::OnClutchMown().

◆ cfg_par_ad_cut

CfgFloat cfg_par_ad_cut("PAR_AD_CUT_MORT", CFG_CUSTOM, 0.01)

static

Adult % mortality on cutting.

Referenced by Partridge_Chick2::OnFarmEvent(), Partridge_Male::OnFarmEvent(), and Partridge_Female::OnFarmEvent().

◆ cfg_par_adult_mortality_alone

CfgFloat cfg_par_adult_mortality_alone("PAR_ADULT_MORTALITY_ALONE", CFG_CUSTOM, 1.4)

static

Adults - extra mortality scaler if alone.

Referenced by Partridge_Male::DailyMortality(), and Partridge_Female::DailyMortality().

◆ cfg_par_adult_mortalitySpring

CfgFloat cfg_par_adult_mortalitySpring("PAR_ADULT_MORTALITYSPRING", CFG_CUSTOM, 0.0096)

static

Adults - daily probability of non-explicitly modelled mortality in Spring.

Referenced by Partridge_Male::DailyMortality(), and Partridge_Female::DailyMortality().

◆ cfg_par_adult_mortalitySummer

CfgFloat cfg_par_adult_mortalitySummer("PAR_ADULT_MORTALITYSUMMER", CFG_CUSTOM, 0.0001)

static

Adults - daily probability of non-explicitly modelled mortality in Summer.

Referenced by Partridge_Chick2::DailyMortality(), Partridge_Male::DailyMortality(), and Partridge_Female::DailyMortality().

◆ cfg_par_adult_mortalityWinter

CfgFloat cfg_par_adult_mortalityWinter("PAR_ADULT_MORTALITYWINTER", CFG_CUSTOM, 0.0217)

static

Adults - daily probability of non-explicitly modelled mortality in Winter.

Referenced by Partridge_Chick2::DailyMortality(), Partridge_Male::DailyMortality(), and Partridge_Female::DailyMortality().

◆ cfg_par_base_mortality

CfgInt cfg_par_base_mortality("PAR_BASE_MORTALITY", CFG_CUSTOM, 0)

static

Unused.

Referenced by Partridge_Base::DailyMortality().

◆ cfg_par_ch_cut

CfgFloat cfg_par_ch_cut("PAR_CH_CUT_MORT", CFG_CUSTOM, 0.05)

static

Chick % mortality on cutting.

Referenced by Partridge_Chick::OnFarmEvent().

◆ cfg_par_chick2_mortality

CfgFloat cfg_par_chick2_mortality("PAR_CHICK_TWO_MORTALITY", CFG_CUSTOM, 1.0)

static

Chick2 - scaler applied to adult mortalities.

3rd March 2008. Chick2 mortality is now a scaler applied to adult mort - so 1.0 = adult, 2.0 = double adult

Referenced by Partridge_Chick2::DailyMortality().

◆ cfg_par_chick_mortality

CfgFloat cfg_par_chick_mortality("PAR_CHICK_MORTALITY", CFG_CUSTOM, 0.02043)

static

Chick - daily probability of non-explicitly modelled mortality.

Referenced by Partridge_Chick::DailyMortality().

◆ cfg_par_cl_cut

CfgFloat cfg_par_cl_cut("PAR_CL_CUT_MORT", CFG_CUSTOM, 0.29)

static

Clutch % mortality on cutting.

Referenced by Partridge_Clutch::OnFarmEvent().

◆ cfg_par_clutch_mortality

CfgFloat cfg_par_clutch_mortality("PAR_CLUTCH_MORTALITY", CFG_CUSTOM, 0.00135)

static

Clutch - daily probability of non-explicitly modelled mortality.

Referenced by Partridge_Female::FIncubating(), and Partridge_Female::FLaying().

◆ cfg_par_days_per_egg

CfgFloat cfg_par_days_per_egg("PAR_DAY_PER_EGG", CFG_CUSTOM, 1.5)

static

Days taken to lay 1 egg.

Referenced by Partridge_Female::FLaying().

◆ cfg_par_days_to_make_nest

CfgInt cfg_par_days_to_make_nest("PAR_DAYS_TO_MAKE_NEST", CFG_CUSTOM, 5)

static

Days used for nestbuilding.

Referenced by Partridge_Female::FBuildingUpResources().

◆ cfg_par_extraction_rate

CfgFloat cfg_par_extraction_rate("PAR_EXTRACTION_RATE", CFG_CUSTOM, 0.0085)

static

Food extraction rate.

The extraction rate includes the amount of insects removed per m2, plus assimilation efficiency to convert the g/insects/m2 to kcal available

Referenced by Partridge_Chick::ChDeveloping().

◆ cfg_par_female_incubation_mortality_const

CfgFloat cfg_par_female_incubation_mortality_const("PAR_FEMALE_INCUBATION_MORTALITY_CONST", CFG_CUSTOM, 1.00192)

static

Increasing hen predation with density (intercept)

Referenced by Partridge_Female::FIncubating().

◆ cfg_par_female_incubation_mortality_slope

CfgFloat cfg_par_female_incubation_mortality_slope("PAR_FEMALE_INCUBATION_MORTALITY_SLOPE", CFG_CUSTOM, -0.00122)

static

Increasing hen predation with density (slope)

Referenced by Partridge_Female::FIncubating().

◆ cfg_par_female_movement_max

CfgInt cfg_par_female_movement_max("PAR_FEMALE_MOVEMENT_MAX", CFG_CUSTOM, 100)

static

Female max daily movement.

According to Dick Potts: females stay closer to the covey than males so the female search area is much smaller than the males

Referenced by Partridge_Female::FFindingTerritory().

◆ cfg_par_incubation_period

CfgInt cfg_par_incubation_period("PAR_INCUBATION_PERIOD", CFG_CUSTOM, 24)

static

Lenght of incubation period.

Referenced by Partridge_Clutch::ClDeveloping().

◆ cfg_par_infertile_eggs

CfgFloat cfg_par_infertile_eggs("PAR_INFERTILE_EGGS", CFG_CUSTOM, 0.08)

static

Proportion of infertile eggs.

Referenced by Partridge_Clutch::ClDeveloping().

◆ cfg_par_last_brood_date

CfgInt cfg_par_last_brood_date("PAR_LAST_BROOD_DATE", CFG_CUSTOM, 180)

Latest date for a reproduction attempt.

Referenced by Partridge_Female::FMakingNest(), Partridge_Female::FStartingNewBrood(), and Partridge_Population_Manager::Init().

◆ cfg_par_male_gives_up

CfgInt cfg_par_male_gives_up("PAR_MALE_GIVES_UP", CFG_CUSTOM, 170)

Latest date a male will mate search.

Referenced by Partridge_Population_Manager::DoFirst(), and Partridge_Population_Manager::TestShouldFlock().

◆ cfg_par_MaleFlyingDistance

CfgInt cfg_par_MaleFlyingDistance("PAR_MALEFLYINGDISTANCE", CFG_CUSTOM, 2000)

static

The maximum flying distance for males.

Referenced by Partridge_Male::MFindingMate().

◆ cfg_par_MaleMateSearchArea

CfgInt cfg_par_MaleMateSearchArea("PAR_MALEMATESEARCHAREA", CFG_CUSTOM, 500)

static

Male mate searching radius.

Referenced by Partridge_Male::MFindingMate().

◆ cfg_par_mature_threshold

CfgInt cfg_par_mature_threshold("PAR_MATURE_THRESHOLD", CFG_CUSTOM, 84)

Age at maturing in days.

Referenced by Partridge_Covey::BeginStep(), Partridge_Chick2::ChDeveloping(), and Partridge_Population_Manager::FillInFoodArray().

◆ cfg_par_max_lifespan

CfgInt cfg_par_max_lifespan("PAR_MAX_LIFESPAN", CFG_CUSTOM, 3650)

Maximum physiological lifespan.

Referenced by Partridge_Female::Partridge_Female(), and Partridge_Male::Partridge_Male().

◆ cfg_par_max_terr_qual

CfgInt cfg_par_max_terr_qual("PAR_MAX_TERR_QUAL", CFG_CUSTOM, 13000)

The minimum territory quality needed in early season.

Referenced by Partridge_Population_Manager::Init().

◆ cfg_par_min_lifespan

CfgInt cfg_par_min_lifespan("PAR_MIN_LIFESPAN", CFG_CUSTOM, 1825)

Minimum physiological lifespan.

Referenced by Partridge_Female::Partridge_Female(), and Partridge_Male::Partridge_Male().

◆ cfg_par_min_no_eggs

CfgInt cfg_par_min_no_eggs("PAR_MIN_NO_EGGS", CFG_CUSTOM, 7)

static

Minimum clutch size.

Referenced by Partridge_Female::FMakingNest(), and Partridge_Female::FStartingNewBrood().

◆ cfg_par_min_terr_qual

CfgInt cfg_par_min_terr_qual("PAR_MIN_TERR_QUAL", CFG_CUSTOM, 6900)

The minimum territory quality needed in late season.

Referenced by Partridge_Population_Manager::Init().

◆ cfg_par_start_dissolve

CfgInt cfg_par_start_dissolve

The earliest covey dissolve date.

Definition at line 94 of file Partridge_Population_Manager.cpp.

Referenced by Partridge_Population_Manager::DoFirst(), Partridge_Female::FFindingTerritory(), Partridge_Population_Manager::Init(), Partridge_Male::MFindingMate(), and Partridge_Population_Manager::TestShouldFlock().

◆ cfg_par_starve_threshold

CfgInt cfg_par_starve_threshold("PAR_STARVE_THRESHOLD", CFG_CUSTOM, 4)

static

Chick - no. days or negative energy before death.

Referenced by Partridge_Chick::ChDeveloping().

◆ cfg_par_triggerlaying

CfgInt cfg_par_triggerlaying("PAR_TRIGGERLAYING", CFG_CUSTOM, 850)

static

The number of minutes daylight as a minimum before triggering egg-laying behaviour.

Referenced by Partridge_Female::FBuildingUpResources().

◆ cfg_par_triggerlayingvar

CfgInt cfg_par_triggerlayingvar("PAR_TRIGGERLAYINGVAR", CFG_CUSTOM, 48)

static

Generates variation around the laying trigger.

Referenced by Partridge_Female::Partridge_Female().

◆ g_FoodNeed

double g_FoodNeed[200]

Definition at line 65 of file Partridge_Population_Manager.cpp.

Referenced by Partridge_Chick::ChDeveloping().

◆ g_manager

Partridge_Population_Manager* g_manager

Clutch mortality on soil cultivation.

Chick mortality on soil cultivation

Adult mortality on soil cultivation

Definition at line 150 of file Partridge_All.cpp.

◆ g_MaxWalk

int g_MaxWalk[200]

Definition at line 66 of file Partridge_Population_Manager.cpp.

Referenced by Partridge_Chick::BeginStep(), Partridge_Chick2::BeginStep(), Partridge_Female::FCaringForYoung(), and Partridge_Male::MCaringForYoung().

◆ g_par_rainfactor

double g_par_rainfactor

Definition at line 63 of file Partridge_Population_Manager.cpp.

Referenced by Partridge_Chick::ChDeveloping(), and Partridge_Population_Manager::Init().

◆ g_partridge_id

long g_partridge_id = 0

static

Definition at line 151 of file Partridge_All.cpp.

Referenced by Partridge_Base::Partridge_Base().

◆ g_rand_uni

boost::variate_generator<base_generator_type&, boost::uniform_real<> > g_rand_uni

Referenced by Partridge_Clutch::ClDeveloping(), Partridge_Chick::DailyMortality(), Partridge_Chick2::DailyMortality(), Partridge_Male::DailyMortality(), Partridge_Female::DailyMortality(), Partridge_Female::FIncubating(), Partridge_Female::FLaying(), Partridge_Female::OnClutchMown(), Partridge_Clutch::OnFarmEvent(), Partridge_Chick::OnFarmEvent(), Partridge_Chick2::OnFarmEvent(), Partridge_Male::OnFarmEvent(), and Partridge_Female::OnFarmEvent().

Variables

Detailed Description

Variable Documentation

◆ cfg_buildupwait

◆ cfg_female_mowing_chance

◆ cfg_par_ad_cut

◆ cfg_par_adult_mortality_alone

◆ cfg_par_adult_mortalitySpring

◆ cfg_par_adult_mortalitySummer

◆ cfg_par_adult_mortalityWinter

◆ cfg_par_base_mortality

◆ cfg_par_ch_cut

◆ cfg_par_chick2_mortality

◆ cfg_par_chick_mortality

◆ cfg_par_cl_cut

◆ cfg_par_clutch_mortality

◆ cfg_par_days_per_egg

◆ cfg_par_days_to_make_nest

◆ cfg_par_extraction_rate

◆ cfg_par_female_incubation_mortality_const

◆ cfg_par_female_incubation_mortality_slope

◆ cfg_par_female_movement_max

◆ cfg_par_incubation_period

◆ cfg_par_infertile_eggs

◆ cfg_par_last_brood_date

◆ cfg_par_male_gives_up

◆ cfg_par_MaleFlyingDistance

◆ cfg_par_MaleMateSearchArea

◆ cfg_par_mature_threshold

◆ cfg_par_max_lifespan

◆ cfg_par_max_terr_qual

◆ cfg_par_min_lifespan

◆ cfg_par_min_no_eggs

◆ cfg_par_min_terr_qual

◆ cfg_par_start_dissolve

◆ cfg_par_starve_threshold

◆ cfg_par_triggerlaying

◆ cfg_par_triggerlayingvar

◆ g_FoodNeed

◆ g_manager

◆ g_MaxWalk

◆ g_par_rainfactor

◆ g_partridge_id

◆ g_rand_uni