MRR_Data Class Reference

Class for running mark-release-recapture experiments. More...

#include <Hare_all.h>

Public Member Functions
void	AddEntry (int a_RefNum)
void	IncTrapping ()
	MRR_Data ()
void	OutputToFile ()

Protected Attributes
int	m_currenttrapping
vector< MRR_Entry >	m_Entries

Detailed Description

Class for running mark-release-recapture experiments.

Definition at line 118 of file Hare_all.h.

Constructor & Destructor Documentation

MRR_Data()

MRR_Data::MRR_Data

(

)

Constructor for MRR_Data

Definition at line 4290 of file Hare_all.cpp.

                   {
    m_currenttrapping=0;
    m_Entries.resize(0);
}

References m_currenttrapping, and m_Entries.

Member Function Documentation

AddEntry()

void MRR_Data::AddEntry

(

int

a_RefNum

)

Adds a new entry to the Mark Release Recapture data vector

Definition at line 4298 of file Hare_all.cpp.

                                    {
    // First do we have this RefNum in the vector?
    vector<MRR_Entry>::iterator current = m_Entries.begin();
    vector<MRR_Entry>::iterator found = m_Entries.end();
    bool flag=false;
    while (current != found)
    {
        if ( (*current).m_HareRefNum==a_RefNum ) {
            found=current;
            flag=true;
        } else current++;
    }
    MRR_Entry mre;
    if (flag) {
        // Get the entry out to mre
//      mre=(*found);
        if (m_currenttrapping<32) {
            unsigned int mask = 0x01 << m_currenttrapping;
            (*found).m_trappings1 += mask;
        } else {
            unsigned int mask = 0x01 << (m_currenttrapping-32);
            (*found).m_trappings2 += mask;
        }
    } else {
        mre.m_HareRefNum=a_RefNum;
        mre.m_trappings1=0;
        mre.m_trappings2=0;
        if (m_currenttrapping<32) {
            unsigned int mask = 0x01 << m_currenttrapping;
            mre.m_trappings1 += mask;
        } else {
            unsigned int mask = 0x01 << (m_currenttrapping-32);
            mre.m_trappings2 += mask;
        }
        m_Entries.insert(m_Entries.begin(),mre); // Put at the beginning because this is the one most likely found next time
    }
}

References m_currenttrapping, m_Entries, MRR_Entry::m_HareRefNum, MRR_Entry::m_trappings1, and MRR_Entry::m_trappings2.

Referenced by THare_Population_Manager::MRROutputs().

IncTrapping()

void MRR_Data::IncTrapping ( )

inline

Definition at line 123 of file Hare_all.h.

{ m_currenttrapping++; }

References m_currenttrapping.

Referenced by THare_Population_Manager::MRROutputs().

OutputToFile()

void MRR_Data::OutputToFile

(

)

Produces a file output for the Mark Release Recapture data

Definition at line 4340 of file Hare_all.cpp.

                            {
    FILE* MRROut = fopen("MRR_Hare.txt","w");
    if (!MRROut) {
           // something wrong if the program gets to here
           g_land->Warn("THare_Population_Manager::MRROutputs - MRR_Hare.txt can't be opened",NULL);
           exit(1);
    }
    vector<MRR_Entry>::iterator current = m_Entries.begin();
    MRR_Entry mre;
    for (vector<MRR_Entry>::iterator i = m_Entries.begin(); i< m_Entries.end(); i++) {
            mre=(*i);
            unsigned int mask= 0x01;
            for (int j=0; j<32; j++) {
                if ((mask & mre.m_trappings1) > 0 ) {
                    fprintf(MRROut,"%d\t",1);
                } else fprintf(MRROut,"%d\t",0);
                mask = mask << 1;
            }
            mask=0;
            for (int j=0; j<32; j++) {
                if ((mask & mre.m_trappings2) > 0 ) {
                    fprintf(MRROut,"%d\t",1);
                } else fprintf(MRROut,"%d\t",0);
                mask = mask << 1;
            }
            fprintf(MRROut,"%d\n",mre.m_HareRefNum);
    }
    fclose(MRROut);
}

References g_land, m_Entries, MRR_Entry::m_HareRefNum, MRR_Entry::m_trappings1, MRR_Entry::m_trappings2, and Landscape::Warn().

Referenced by THare_Population_Manager::MRROutputs().

Member Data Documentation

m_currenttrapping

int MRR_Data::m_currenttrapping

protected

Definition at line 126 of file Hare_all.h.

Referenced by AddEntry(), IncTrapping(), and MRR_Data().

m_Entries

vector<MRR_Entry> MRR_Data::m_Entries

protected

Definition at line 127 of file Hare_all.h.

Referenced by AddEntry(), MRR_Data(), and OutputToFile().

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The documentation for this class was generated from the following files:

• C:/Repo/ALMaSS_all/Hare/Hare_all.h
• C:/Repo/ALMaSS_all/Hare/Hare_all.cpp